Index

_

__add__() (datamint.dataset.base.DatamintBaseDataset method) __del__() (datamint.api.base_api.BaseApi method) __enter__() (datamint.api.base_api.BaseApi method) __exit__() (datamint.api.base_api.BaseApi method) __getattr__() (datamint.entities.base_entity.BaseEntity method) __getitem__() (datamint.dataset.base.DatamintBaseDataset method) (datamint.dataset.sliced_dataset.SlicedVolumeDataset method) (datamint.dataset.sliced_video_dataset.SlicedVideoDataset method)

__iter__() (datamint.dataset.base.DatamintBaseDataset method) __len__() (datamint.dataset.base.DatamintBaseDataset method) __repr__() (datamint.api.endpoints.model_types.Model method) (datamint.api.endpoints.model_types.ModelVersion method) (datamint.entities.resource.LocalResource method) (datamint.entities.resource.Resource method) __str__() (datamint.api.endpoints.model_types.Model method) (datamint.api.endpoints.model_types.ModelVersion method) (datamint.entities.resource.LocalResource method)

A

add_ai_segmentations() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) add_box_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) add_category_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) add_label_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) add_line_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) add_point_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) add_polyline_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) add_resources() (datamint.api.endpoints.projects_api.ProjectsApi method) add_segments() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) add_tags() (datamint.api.endpoints.resources_api.ResourcesApi method) add_text_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) add_transform() (datamint.dataset.base.DatamintBaseDataset method) added_by (datamint.entities.annotations.Annotation property) AgreementResult (class in datamint.utils.annotation_agreement) ai_model_id (datamint.entities.project.Project attribute) aliases (datamint.api.endpoints.model_types.ModelVersion property) ALL_FRAMES (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) ANGLE (datamint.entities.annotations.AnnotationType attribute) annotated_resource_count (datamint.entities.project.Project attribute) Annotation (class in datamint.entities.annotations) annotation_from_dict() (in module datamint.entities.annotations) annotation_ids (datamint.entities.inferencejob.InferenceJob attribute) annotation_source (datamint.api.dto.SaveResultsOptions attribute), [1] annotation_specs (datamint.mlflow.flavors.model.BaseDatamintModel attribute) annotation_type (datamint.entities.annotations.Annotation attribute) annotation_worklist_id (datamint.entities.annotations.Annotation attribute), [1] annotation_worklist_name (datamint.entities.annotations.Annotation attribute), [1] AnnotationProcessor (class in datamint.dataset.annotation_processor) annotations (datamint.api.client.Api property)

AnnotationsApi (class in datamint.api.endpoints.annotations_api) annotationsets (datamint.api.client.Api property) AnnotationType (class in datamint.entities.annotations) AnnotationWorklistApi (class in datamint.api.endpoints.annotationsets_api) annotationworklists (datamint.api.client.Api property) annotators (datamint.entities.project.Project attribute), [1] ANOMALY_DETECTION (datamint.mlflow.flavors.task_type.TaskType attribute) Api (class in datamint.api.client) api_key (datamint.api.base_api.ApiConfig attribute), [1] ApiConfig (class in datamint.api.base_api) apply_alb_transform() (datamint.dataset.base.DatamintBaseDataset method) (datamint.dataset.image_dataset.ImageDataset method) (datamint.dataset.multiframe_dataset.MultiFrameDataset method) (datamint.dataset.sliced_dataset.SlicedVolumeDataset method) (datamint.dataset.sliced_video_dataset.SlicedVideoDataset method) apply_merge_strategy() (datamint.dataset.annotation_processor.AnnotationProcessor method) approve() (datamint.api.endpoints.annotations_api.AnnotationsApi method) approved_at (datamint.entities.annotations.Annotation attribute), [1] approved_by (datamint.entities.annotations.Annotation attribute), [1] archived (datamint.entities.project.Project attribute), [1] AREA (datamint.entities.annotations.AnnotationType attribute) area (datamint.entities.annotations.BoxGeometry property) (datamint.entities.annotations.RegionGeometry property) asdict() (datamint.entities.base_entity.BaseEntityModel method) asjson() (datamint.entities.base_entity.BaseEntityModel method) assign_splits() (datamint.api.endpoints.projects_api.ProjectsApi method) associated_file (datamint.entities.annotations.Annotation attribute), [1] AuthenticationError author_email (datamint.api.dto.SaveResultsOptions attribute), [1]

B

BaseApi (class in datamint.api.base_api) BaseDatamintModel (class in datamint.mlflow.flavors.model) BaseEntity (class in datamint.entities.base_entity) BaseEntityModel (class in datamint.entities.base_entity) BaseTrainer (class in datamint.lightning.trainers) (class in datamint.lightning.trainers.base_trainer) Benchmark (class in datamint.lightning.benchmark) box_labels_set (datamint.dataset.base.DatamintBaseDataset property) BoxAnnotation (class in datamint.entities.annotations) boxes (datamint.api.dto.InferencePrompts attribute) (datamint.importers.coco.COCOSample attribute) (datamint.importers.pascal_voc.PascalVOCSample attribute) (datamint.importers.yolo.YOLOSample attribute) (datamint.mlflow.flavors.prediction_router.DeployedModelPrompts attribute)

BoxGeometry (class in datamint.entities.annotations) BoxPrompt (class in datamint.api.dto) bridge_mode() (in module datamint.mlflow.flavors.prediction_router) build_logs (datamint.entities.deployjob.DeployJob attribute) build_mlflow_dataset() (datamint.dataset.base.DatamintBaseDataset method) bulk_delete() (datamint.api.endpoints.resources_api.ResourcesApi method) (datamint.api.entity_base_api.DeletableEntityApi method) bulk_download_file() (datamint.api.endpoints.annotations_api.AnnotationsApi method) bulk_publish() (datamint.api.endpoints.resources_api.ResourcesApi method) bulk_restore() (datamint.api.endpoints.resources_api.ResourcesApi method)

C

cache_resources() (datamint.api.endpoints.resources_api.ResourcesApi method) (datamint.entities.project.Project method) cache_root (datamint.entities.cache_manager.CacheManager attribute) cached_at (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) CacheManager (class in datamint.entities.cache_manager) CacheManager.ItemMetadata (class in datamint.entities.cache_manager) cancel() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) (datamint.api.endpoints.inference_api.InferenceApi method) categories (datamint.entities.resource.Resource attribute) CATEGORY (datamint.entities.annotations.AnnotationType attribute) CategoryAnnotation (class in datamint.entities.annotations) Channel (class in datamint.entities.channel) channel_name (datamint.entities.channel.Channel attribute), [1] ChannelResourceData (class in datamint.entities.channel) check_connection() (datamint.api.client.Api method) CIRCLE (datamint.entities.annotations.AnnotationType attribute) class_map (datamint.entities.annotations.VolumeSegmentation attribute) class_names (datamint.entities.annotations.VolumeSegmentation property) (datamint.importers.coco.COCOParseResult attribute) (datamint.importers.pascal_voc.PascalVOCParseResult attribute) (datamint.importers.yolo.YOLOParseResult attribute) ClassificationModule (class in datamint.lightning.trainers.lightning_modules.classification_module) ClassificationTrainer (class in datamint.lightning.trainers) (class in datamint.lightning.trainers.classification_trainer) clear_all() (datamint.entities.cache_manager.CacheManager method) clone_model() (datamint.api.endpoints.models_api.ModelsApi method) close() (datamint.api.base_api.BaseApi method) (datamint.api.client.Api method) closed (datamint.entities.annotations.RegionGeometry attribute) closed_resources_count (datamint.entities.project.Project attribute) COCOBox (class in datamint.importers.coco) COCOImporter (class in datamint.importers.coco) COCOImportResult (class in datamint.importers.coco) COCOParseResult (class in datamint.importers.coco) COCOSample (class in datamint.importers.coco) cohen_kappa() (in module datamint.utils.annotation_agreement) collate_frame_segmentations() (datamint.dataset.annotation_processor.AnnotationProcessor method) completed_at (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) compute_agreement() (in module datamint.utils.annotation_agreement) compute_agreement_weight() (datamint.dataset.annotation_processor.AnnotationProcessor method) compute_category_agreement_weight() (datamint.dataset.annotation_processor.AnnotationProcessor static method)

configure_optimizers() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) convert_format() (datamint.api.base_api.BaseApi static method) convert_image_categories() (datamint.dataset.annotation_processor.AnnotationProcessor method) convert_image_labels() (datamint.dataset.annotation_processor.AnnotationProcessor method) coordinate_system (datamint.entities.annotations.Geometry attribute) covers_frame() (datamint.entities.annotations.Annotation method) CreatableEntityApi (class in datamint.api.entity_base_api) create() (datamint.api.endpoints.annotations_api.AnnotationsApi method) (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) (datamint.api.endpoints.models_api.ModelsApi method) (datamint.api.endpoints.projects_api.ProjectsApi method) (datamint.api.endpoints.users_api.UsersApi method) (datamint.api.entity_base_api.CreatableEntityApi method) create_experiment() (datamint.mlflow.tracking.datamint_store.DatamintStore method) create_image_classification() (datamint.api.endpoints.annotations_api.AnnotationsApi method) create_numeric_annotation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) CreateAnnotationDto (class in datamint.api.dto) created_at (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.channel.Channel attribute), [1] (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.entities.inferencejob.InferenceJob attribute) (datamint.entities.project.Project attribute), [1] (datamint.entities.project_resource_split.ProjectResourceSplit attribute) (datamint.entities.resource.Resource attribute) (datamint.entities.user.User attribute), [1] created_by (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.channel.ChannelResourceData attribute), [1] (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.entities.project.Project attribute), [1] (datamint.entities.project_resource_split.ProjectResourceSplit attribute) (datamint.entities.resource.Resource attribute) created_by_model (datamint.entities.annotations.Annotation attribute), [1] creation_timestamp (datamint.api.endpoints.model_types.Model property) (datamint.api.endpoints.model_types.ModelVersion property) CRUDEntityApi (class in datamint.api.entity_base_api) current_stage (datamint.api.endpoints.model_types.ModelVersion property) current_step (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) customer_id (datamint.entities.channel.ChannelResourceData attribute), [1] (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.entities.resource.Resource attribute), [1] (datamint.entities.user.User attribute), [1]

D

data_path (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) data_type (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) datamint.api.base_api module datamint.api.client module datamint.api.dto module datamint.api.endpoints.annotations_api module datamint.api.endpoints.annotationsets_api module datamint.api.endpoints.deploy_model_api module datamint.api.endpoints.inference_api module datamint.api.endpoints.model_types module datamint.api.endpoints.models_api module datamint.api.endpoints.projects_api module datamint.api.endpoints.resources_api module datamint.api.endpoints.users_api module datamint.api.entity_base_api module datamint.dataset.annotation_processor module datamint.dataset.base module datamint.dataset.image_dataset module datamint.dataset.multiframe_dataset module datamint.dataset.sliced_dataset module datamint.dataset.sliced_video_dataset module datamint.dataset.video_dataset module datamint.dataset.volume_dataset module datamint.entities.annotations module datamint.entities.base_entity module datamint.entities.cache_manager module datamint.entities.channel module datamint.entities.datasetinfo module datamint.entities.deployjob module datamint.entities.inferencejob module datamint.entities.project module datamint.entities.project_resource_split module datamint.entities.resource module datamint.entities.resources.dicom_resource module datamint.entities.resources.image_resource module datamint.entities.resources.nifti_resource module datamint.entities.resources.video_resource module datamint.entities.resources.volume_resource module datamint.entities.sliced_resource module datamint.entities.sliced_video_resource module datamint.entities.user module datamint.exceptions module datamint.importers.coco module datamint.importers.pascal_voc module datamint.importers.yolo module datamint.lightning.benchmark module datamint.lightning.datamodule module datamint.lightning.trainers module datamint.lightning.trainers.base_trainer module datamint.lightning.trainers.classification_trainer module datamint.lightning.trainers.lightning_modules.base module

datamint.lightning.trainers.lightning_modules.classification_module module datamint.lightning.trainers.lightning_modules.segmentation_module module datamint.lightning.trainers.seg2d_trainer module datamint.lightning.trainers.seg3d_trainer module datamint.lightning.trainers.segmentation_trainer module datamint.lightning.trainers.specialized.unetpp module datamint.mlflow.artifact.datamint_artifacts_repo module datamint.mlflow.data.datamint_dataset module datamint.mlflow.env_utils module datamint.mlflow.env_vars module datamint.mlflow.flavors.datamint_flavor module datamint.mlflow.flavors.model module datamint.mlflow.flavors.prediction_modes module datamint.mlflow.flavors.prediction_router module datamint.mlflow.flavors.task_type module datamint.mlflow.lightning.callbacks.modelcheckpoint module datamint.mlflow.tracking.datamint_store module datamint.mlflow.tracking.default_experiment module datamint.mlflow.tracking.fluent module datamint.utils.annotation_agreement module DATAMINT_API_VENV_NAME (datamint.api.client.Api attribute) DATAMINT_PROJECT_ID (datamint.mlflow.env_vars.EnvVars attribute) DATAMINT_PROJECT_NAME (datamint.mlflow.env_vars.EnvVars attribute) DatamintArtifactsRepository (class in datamint.mlflow.artifact.datamint_artifacts_repo) DatamintBaseDataset (class in datamint.dataset.base) DatamintDatasetException DatamintException DatamintExperimentProvider (class in datamint.mlflow.tracking.default_experiment) DatamintLightningModule (class in datamint.lightning.trainers.lightning_modules.base) DatamintMLflowDataset (class in datamint.mlflow.data.datamint_dataset) DatamintModel (class in datamint.mlflow.flavors.model) DatamintStore (class in datamint.mlflow.tracking.datamint_store) datamodule (datamint.lightning.trainers.base_trainer.BaseTrainer property) (datamint.lightning.trainers.BaseTrainer property) dataset (datamint.lightning.trainers.base_trainer.BaseTrainer property) (datamint.lightning.trainers.BaseTrainer property) dataset_id (datamint.entities.project.Project attribute), [1] DatasetInfo (class in datamint.entities.datasetinfo) DeepLabV3PlusTrainer (class in datamint.lightning.trainers) DEFAULT (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) DEFAULT_SERVER_URL (datamint.api.client.Api attribute) DefaultProjectNotSetError DeletableEntityApi (class in datamint.api.entity_base_api) delete() (datamint.api.entity_base_api.DeletableEntityApi method) delete_batch() (datamint.api.endpoints.annotations_api.AnnotationsApi method) delete_model_version() (datamint.api.endpoints.models_api.ModelsApi method) delete_registered_model() (datamint.api.endpoints.models_api.ModelsApi method) delete_segmentation_group() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) delete_user() (datamint.api.endpoints.users_api.UsersApi method) deleted (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.channel.Channel attribute), [1] (datamint.entities.resource.Resource attribute), [1] deleted_at (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.project_resource_split.ProjectResourceSplit attribute) (datamint.entities.resource.Resource attribute), [1] deleted_by (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.project_resource_split.ProjectResourceSplit attribute) (datamint.entities.resource.Resource attribute), [1] deploy (datamint.api.client.Api property) DeployedModelPrompts (class in datamint.mlflow.flavors.prediction_router) DeployJob (class in datamint.entities.deployjob) DeployModelApi (class in datamint.api.endpoints.deploy_model_api) description (datamint.api.endpoints.model_types.Model property) (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.entities.project.Project attribute), [1] detection_collate_fn() (in module datamint.dataset.image_dataset) DetectionTrainer (class in datamint.lightning.trainers) dice_coefficient() (in module datamint.utils.annotation_agreement) DICOMResource (class in datamint.entities.resources.dicom_resource) difficult (datamint.importers.pascal_voc.PascalVOCBox attribute) discover() (datamint.mlflow.flavors.prediction_router.PredictionRouter static method) dispatch() (datamint.mlflow.flavors.prediction_router.PredictionRouter method) DISTANCE (datamint.entities.annotations.AnnotationType attribute) download_annotations() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) (datamint.api.endpoints.projects_api.ProjectsApi method) download_file() (datamint.api.endpoints.annotations_api.AnnotationsApi method) download_multiple_files() (datamint.api.endpoints.annotations_api.AnnotationsApi method) download_multiple_resources() (datamint.api.endpoints.resources_api.ResourcesApi method) download_resource_file() (datamint.api.endpoints.resources_api.ResourcesApi method) download_resource_frame() (datamint.api.endpoints.resources_api.ResourcesApi method) download_resources_datas() (datamint.entities.project.Project method)

E

EfficientNetV2Trainer (class in datamint.lightning.trainers) email (datamint.entities.user.User attribute), [1] enable_sample_logging() (datamint.lightning.trainers.lightning_modules.base.DatamintLightningModule method) ensure_mlflow_configured() (in module datamint.mlflow.env_utils) entity_id (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) entity_type (datamint.entities.cache_manager.CacheManager attribute) EntityAlreadyExistsError EntityBaseApi (class in datamint.api.entity_base_api)

EnvVars (class in datamint.mlflow.env_vars) error_message (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) errors (datamint.importers.coco.COCOImportResult attribute) (datamint.importers.pascal_voc.PascalVOCImportResult attribute) (datamint.importers.yolo.YOLOImportResult attribute) experiment_name (datamint.lightning.trainers.base_trainer.BaseTrainer property) (datamint.lightning.trainers.BaseTrainer property) extra_info (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute)

F

fallback_to_default (datamint.mlflow.flavors.prediction_router.ModeSpec attribute) fetch_annotations() (datamint.entities.resource.Resource method) fetch_file_data() (datamint.entities.annotations.Annotation method) (datamint.entities.resource.LocalResource method) (datamint.entities.resource.Resource method) fetch_frame_data() (datamint.entities.sliced_video_resource.SlicedVideoResource method) fetch_resources() (datamint.entities.project.Project method) fetch_worklists() (datamint.entities.project.Project method) FEW_SHOT (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) file (datamint.entities.annotations.Annotation attribute) file_name (datamint.importers.coco.COCOSample attribute) (datamint.importers.pascal_voc.PascalVOCSample attribute) (datamint.importers.yolo.YOLOSample attribute) filename (datamint.entities.resource.Resource attribute) filename_suffixes (datamint.entities.resource.Resource attribute) (datamint.entities.resources.dicom_resource.DICOMResource attribute) (datamint.entities.resources.nifti_resource.NiftiResource attribute) filepath_cached (datamint.entities.resource.LocalResource property) (datamint.entities.resource.Resource property) filter() (datamint.dataset.base.DatamintBaseDataset method) filter_annotations() (datamint.dataset.annotation_processor.AnnotationProcessor static method) firstname (datamint.entities.user.User attribute), [1] fit() (datamint.lightning.trainers.base_trainer.BaseTrainer method) (datamint.lightning.trainers.BaseTrainer method) (datamint.lightning.trainers.NNUNetTrainer method) flagged (datamint.utils.annotation_agreement.AgreementResult attribute), [1]

fleiss_kappa() (in module datamint.utils.annotation_agreement) FLOAT (datamint.entities.annotations.AnnotationType attribute) forward() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) FRAME (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) frame_by_frame() (datamint.dataset.video_dataset.VideoDataset method) frame_count (datamint.entities.resources.video_resource.VideoResource property) (datamint.entities.resources.volume_resource.VolumeResource property) frame_idx (datamint.entities.inferencejob.InferenceJob attribute) frame_index (datamint.entities.annotations.Annotation attribute), [1] frame_labels_set (datamint.dataset.base.DatamintBaseDataset property) FRAME_RANGE (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) frame_ranges (datamint.entities.annotations.Annotation attribute), [1] from_coordinates() (datamint.entities.annotations.BoxGeometry class method) (datamint.entities.annotations.PointGeometry class method) (datamint.entities.annotations.RegionGeometry class method) from_dataset() (datamint.dataset.sliced_dataset.SlicedVolumeDataset class method) (datamint.dataset.sliced_video_dataset.SlicedVideoDataset class method) from_dict() (datamint.entities.annotations.Annotation class method) (datamint.mlflow.flavors.prediction_router.DeployedModelPrompts class method) from_local_file() (datamint.entities.resource.Resource static method) from_point() (datamint.entities.annotations.PointAnnotation class method) from_points() (datamint.entities.annotations.BoxAnnotation class method) (datamint.entities.annotations.LineAnnotation class method) (datamint.entities.annotations.RegionAnnotation class method) from_semantic_segmentation() (datamint.entities.annotations.VolumeSegmentation class method)

G

Geometry (class in datamint.entities.annotations) geometry (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.annotations.BoxAnnotation attribute) (datamint.entities.annotations.LineAnnotation attribute) (datamint.entities.annotations.PointAnnotation attribute) (datamint.entities.annotations.RegionAnnotation attribute) get() (datamint.entities.cache_manager.CacheManager method) get_ai_segmentations() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) get_all() (datamint.api.endpoints.models_api.ModelsApi method) (datamint.api.endpoints.projects_api.ProjectsApi method) (datamint.api.entity_base_api.EntityBaseApi method) get_annotation_specs() (datamint.api.endpoints.model_types.ModelVersion method) get_annotation_statuses() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) get_annotations() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) (datamint.api.endpoints.resources_api.ResourcesApi method) get_annotations_statistics() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) get_annotations_stats() (datamint.api.endpoints.projects_api.ProjectsApi method) get_annotator_status() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) (datamint.api.endpoints.projects_api.ProjectsApi method) get_annotators_statistics() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) get_annotators_stats() (datamint.api.endpoints.projects_api.ProjectsApi method) get_area() (datamint.entities.annotations.ImageSegmentation method) get_author() (datamint.dataset.annotation_processor.AnnotationProcessor static method) get_by_email() (datamint.api.endpoints.users_api.UsersApi method) get_by_id() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) (datamint.api.endpoints.inference_api.InferenceApi method) (datamint.api.endpoints.users_api.UsersApi method) (datamint.api.entity_base_api.EntityBaseApi method) get_by_name() (datamint.api.endpoints.models_api.ModelsApi method) (datamint.api.endpoints.projects_api.ProjectsApi method) get_by_project() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) get_cache_info() (datamint.entities.cache_manager.CacheManager method) get_collate_fn() (datamint.dataset.base.DatamintBaseDataset method) get_created_datetime() (datamint.entities.annotations.Annotation method) get_dataloader() (datamint.dataset.base.DatamintBaseDataset method) get_deleted() (datamint.api.endpoints.annotations_api.AnnotationsApi method) (datamint.api.endpoints.projects_api.ProjectsApi method) (datamint.api.endpoints.resources_api.ResourcesApi method) get_deployed_model_info() (datamint.api.endpoints.models_api.ModelsApi method) get_depth() (datamint.entities.resource.Resource method) (datamint.entities.resources.image_resource.ImageResource method) (datamint.entities.resources.video_resource.VideoResource method) (datamint.entities.resources.volume_resource.VolumeResource method) (datamint.entities.sliced_video_resource.SlicedVideoResource method) get_dimensions() (datamint.entities.resources.image_resource.ImageResource method) (datamint.entities.resources.video_resource.VideoResource method) get_expected_path() (datamint.entities.cache_manager.CacheManager method) get_experiment_by_name() (datamint.mlflow.tracking.datamint_store.DatamintStore method) get_experiment_id() (datamint.mlflow.tracking.default_experiment.DatamintExperimentProvider method) get_files_matrix_stats() (datamint.api.endpoints.projects_api.ProjectsApi method)

get_frame() (datamint.entities.resource.Resource method) get_frame_ranges() (datamint.api.endpoints.annotations_api.AnnotationsApi method) get_frame_resource() (datamint.entities.resource.Resource method) get_hyperparameters() (datamint.api.endpoints.model_types.ModelVersion method) get_invitations() (datamint.api.endpoints.users_api.UsersApi method) get_latest_version() (datamint.api.endpoints.model_types.Model method) get_list() (datamint.api.endpoints.annotations_api.AnnotationsApi method) (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) (datamint.api.endpoints.models_api.ModelsApi method) (datamint.api.endpoints.resources_api.ResourcesApi method) (datamint.api.entity_base_api.EntityBaseApi method) get_logs() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) (datamint.entities.deployjob.DeployJob method) get_members() (datamint.api.endpoints.projects_api.ProjectsApi method) get_memory() (datamint.entities.cache_manager.CacheManager method) get_metrics() (datamint.api.endpoints.model_types.Model method) (datamint.api.endpoints.model_types.ModelVersion method) get_mlflow_models() (datamint.mlflow.flavors.model.DatamintModel method) get_mlflow_torch_models() (datamint.mlflow.flavors.model.DatamintModel method) get_models() (datamint.api.endpoints.projects_api.ProjectsApi method) get_not_annotated() (datamint.api.endpoints.resources_api.ResourcesApi method) get_path() (datamint.entities.cache_manager.CacheManager method) get_patient_id() (datamint.entities.resource.Resource method) get_pinned_metrics() (datamint.api.endpoints.projects_api.ProjectsApi method) get_pod_logs() (datamint.entities.inferencejob.InferenceJob method) get_project_resources() (datamint.api.endpoints.projects_api.ProjectsApi method) get_projects() (datamint.api.endpoints.model_types.Model method) (datamint.api.endpoints.models_api.ModelsApi method) get_pytorch_model() (datamint.mlflow.flavors.model.DatamintModel method) get_resource() (datamint.dataset.base.DatamintBaseDataset method) get_resource_ids() (datamint.entities.channel.Channel method) get_resource_split() (datamint.api.endpoints.projects_api.ProjectsApi method) get_review_messages() (datamint.api.endpoints.projects_api.ProjectsApi method) get_segmentation_group() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) get_segmentations() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) get_slice() (datamint.entities.resource.Resource method) (datamint.entities.resources.volume_resource.VolumeResource method) get_slice_resource() (datamint.entities.resource.Resource method) (datamint.entities.resources.volume_resource.VolumeResource method) get_splits() (datamint.api.endpoints.projects_api.ProjectsApi method) get_status() (datamint.api.endpoints.inference_api.InferenceApi method) get_status_code() (datamint.api.base_api.BaseApi static method) get_supported_modes() (datamint.api.endpoints.model_types.Model method) (datamint.api.endpoints.model_types.ModelVersion method) (datamint.mlflow.flavors.model.BaseDatamintModel method) get_task_type() (datamint.api.endpoints.model_types.ModelVersion method) get_versions() (datamint.api.endpoints.model_types.Model method) get_worklists() (datamint.api.endpoints.projects_api.ProjectsApi method) group_annotations() (datamint.dataset.annotation_processor.AnnotationProcessor method) group_by_patient() (datamint.dataset.base.DatamintBaseDataset method)

H

has_missing_attrs() (datamint.entities.base_entity.BaseEntity method) height (datamint.entities.resources.image_resource.ImageResource property) (datamint.entities.resources.video_resource.VideoResource property) (datamint.importers.coco.COCOBox attribute)

I

id (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.base_entity.BaseEntityModel attribute) (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) (datamint.entities.project.Project attribute), [1] (datamint.entities.project_resource_split.ProjectResourceSplit attribute) (datamint.entities.resource.Resource attribute) identifier (datamint.entities.annotations.Annotation attribute), [1] IMAGE (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) image_categories_set (datamint.dataset.base.DatamintBaseDataset property) IMAGE_CLASSIFICATION (datamint.mlflow.flavors.task_type.TaskType attribute) image_exists() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) image_labels_set (datamint.dataset.base.DatamintBaseDataset property) image_name (datamint.entities.deployjob.DeployJob attribute) image_path (datamint.importers.coco.COCOSample attribute) (datamint.importers.pascal_voc.PascalVOCSample attribute) (datamint.importers.yolo.YOLOSample attribute) IMAGE_SEGMENTATION (datamint.mlflow.flavors.task_type.TaskType attribute) image_tag (datamint.entities.deployjob.DeployJob attribute) ImageClassification (in module datamint.entities.annotations) ImageClassificationTrainer (class in datamint.lightning.trainers) (class in datamint.lightning.trainers.classification_trainer) ImageDataset (class in datamint.dataset.image_dataset) ImageResource (class in datamint.entities.resources.image_resource) ImageSegmentation (class in datamint.entities.annotations) import_author (datamint.entities.annotations.Annotation attribute) import_to_project() (datamint.importers.coco.COCOImporter method) (datamint.importers.pascal_voc.PascalVOCImporter method) (datamint.importers.yolo.YOLOImporter method) imported_from (datamint.api.dto.SaveResultsOptions attribute), [1] (datamint.entities.annotations.Annotation attribute) in_context() (datamint.mlflow.tracking.default_experiment.DatamintExperimentProvider method) index (datamint.entities.annotations.Annotation property) inference (datamint.api.client.Api property) inference_device (datamint.mlflow.flavors.model.BaseDatamintModel property) InferenceApi (class in datamint.api.endpoints.inference_api) InferenceJob (class in datamint.entities.inferencejob) InferencePrompts (class in datamint.api.dto)

INSTANCE_SEGMENTATION (datamint.mlflow.flavors.task_type.TaskType attribute) instance_to_semantic_segmentation() (datamint.dataset.annotation_processor.AnnotationProcessor method) instance_uid (datamint.entities.resource.Resource attribute), [1] INTEGER (datamint.entities.annotations.AnnotationType attribute) INTERACTIVE (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) invalidate() (datamint.entities.cache_manager.CacheManager method) invalidate_cache() (datamint.entities.annotations.Annotation method) (datamint.entities.datasetinfo.DatasetInfo method) (datamint.entities.resource.Resource method) invalidate_memory() (datamint.entities.cache_manager.CacheManager method) invite() (datamint.api.endpoints.users_api.UsersApi method) iou_boxes() (in module datamint.utils.annotation_agreement) is_attr_missing() (datamint.entities.base_entity.BaseEntity method) is_cached() (datamint.entities.annotations.Annotation method) (datamint.entities.resource.Resource method) is_compressed (datamint.entities.resources.nifti_resource.NiftiResource property) is_deployed() (datamint.api.endpoints.model_types.Model method) (datamint.api.endpoints.model_types.ModelVersion method) is_dicom() (datamint.entities.resource.Resource method) is_finished (datamint.entities.deployjob.DeployJob property) (datamint.entities.inferencejob.InferenceJob property) is_frame_scoped() (datamint.entities.annotations.Annotation method) is_image() (datamint.entities.resource.Resource method) is_image_scoped() (datamint.entities.annotations.Annotation method) is_model (datamint.entities.annotations.Annotation attribute) is_multiframe() (datamint.entities.resource.Resource method) is_nifti() (datamint.entities.resource.Resource method) is_video() (datamint.entities.resource.Resource method) is_volume() (datamint.entities.resource.Resource method) issues (datamint.importers.coco.COCOParseResult attribute) (datamint.importers.pascal_voc.PascalVOCParseResult attribute) (datamint.importers.yolo.YOLOParseResult attribute) ItemNotFoundError items() (datamint.dataset.base.DatamintBaseDataset method) iter_entities_extra_info() (datamint.entities.cache_manager.CacheManager method) iter_frames() (datamint.entities.resource.Resource method) (datamint.entities.resources.video_resource.VideoResource method) iter_slices() (datamint.entities.resource.Resource method) (datamint.entities.resources.volume_resource.VolumeResource method)

J

JobTimeoutError

K

kind (datamint.entities.resource.Resource property)

L

label (datamint.api.dto.PointPrompt attribute), [1] LABEL (datamint.entities.annotations.AnnotationType attribute) label (datamint.importers.coco.COCOBox attribute) (datamint.importers.pascal_voc.PascalVOCBox attribute) (datamint.importers.yolo.YOLOBox attribute) LabelAnnotation (class in datamint.entities.annotations) labels (datamint.entities.resource.Resource attribute) LANDMARK_DETECTION (datamint.mlflow.flavors.task_type.TaskType attribute) last_updated_timestamp (datamint.api.endpoints.model_types.Model property) lastname (datamint.entities.user.User attribute), [1] length (datamint.entities.annotations.LineGeometry property) (datamint.entities.annotations.RegionGeometry property) LINE (datamint.entities.annotations.AnnotationType attribute) LineAnnotation (class in datamint.entities.annotations) LineGeometry (class in datamint.entities.annotations) LINKED_MODELS_DIR (datamint.mlflow.flavors.model.DatamintModel attribute) list_active_jobs() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) list_channels() (datamint.api.endpoints.resources_api.ResourcesApi method)

list_images() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) load_context() (datamint.lightning.trainers.lightning_modules.base.DatamintLightningModule method) (datamint.mlflow.flavors.model.BaseDatamintModel method) (datamint.mlflow.flavors.model.DatamintModel method) load_frame_segmentations() (datamint.dataset.annotation_processor.AnnotationProcessor method) load_from_file() (datamint.lightning.benchmark.Benchmark class method) load_image_segmentations() (datamint.dataset.annotation_processor.AnnotationProcessor method) load_model() (datamint.api.endpoints.model_types.ModelVersion method) (in module datamint.mlflow.flavors.datamint_flavor) load_segmentation_data() (datamint.dataset.annotation_processor.AnnotationProcessor method) load_segmentations() (datamint.dataset.annotation_processor.AnnotationProcessor method) local_filepath (datamint.entities.resource.LocalResource attribute) LocalResource (class in datamint.entities.resource) location (datamint.entities.resource.Resource attribute) log_batch() (datamint.mlflow.tracking.datamint_store.DatamintStore method) log_metric() (datamint.mlflow.tracking.datamint_store.DatamintStore method) log_model() (datamint.api.endpoints.models_api.ModelsApi method) (in module datamint.mlflow.flavors.datamint_flavor) log_param() (datamint.mlflow.tracking.datamint_store.DatamintStore method)

M

matches_payload() (datamint.entities.resource.Resource class method) max_retries (datamint.api.base_api.ApiConfig attribute), [1] measurements (datamint.entities.resource.Resource attribute) merge_image_categories() (datamint.dataset.annotation_processor.AnnotationProcessor static method) merge_image_labels() (datamint.dataset.annotation_processor.AnnotationProcessor method) metadata (datamint.entities.resource.Resource attribute), [1] mimetype (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) (datamint.entities.resource.Resource attribute) mimetype_prefixes (datamint.entities.resource.Resource attribute) (datamint.entities.resources.image_resource.ImageResource attribute) (datamint.entities.resources.video_resource.VideoResource attribute) mimetypes (datamint.entities.resource.Resource attribute) (datamint.entities.resources.dicom_resource.DICOMResource attribute) (datamint.entities.resources.nifti_resource.NiftiResource attribute) missing_images (datamint.importers.coco.COCOParseResult attribute) (datamint.importers.pascal_voc.PascalVOCParseResult attribute) (datamint.importers.yolo.YOLOParseResult attribute) mlflow_model_id (datamint.lightning.trainers.lightning_modules.base.DatamintLightningModule attribute) mlflow_models_uri (datamint.mlflow.flavors.model.DatamintModel property) mlflow_torch_models_uri (datamint.mlflow.flavors.model.DatamintModel property) modality (datamint.entities.resource.Resource attribute) mode (datamint.mlflow.flavors.prediction_router.ModeSpec attribute) Model (class in datamint.api.endpoints.model_types) model (datamint.lightning.trainers.base_trainer.BaseTrainer property) (datamint.lightning.trainers.BaseTrainer property) model_alias (datamint.entities.deployjob.DeployJob attribute) model_config (datamint.api.dto.BoxPrompt attribute) (datamint.api.dto.InferencePrompts attribute) (datamint.api.dto.PointPrompt attribute) (datamint.api.dto.SaveResultsOptions attribute) (datamint.entities.annotations.Annotation attribute) (datamint.entities.annotations.BoxAnnotation attribute) (datamint.entities.annotations.BoxGeometry attribute) (datamint.entities.annotations.CategoryAnnotation attribute) (datamint.entities.annotations.Geometry attribute) (datamint.entities.annotations.ImageSegmentation attribute) (datamint.entities.annotations.LabelAnnotation attribute) (datamint.entities.annotations.LineAnnotation attribute) (datamint.entities.annotations.LineGeometry attribute) (datamint.entities.annotations.NumericAnnotation attribute) (datamint.entities.annotations.PointAnnotation attribute) (datamint.entities.annotations.PointGeometry attribute) (datamint.entities.annotations.RegionAnnotation attribute) (datamint.entities.annotations.RegionGeometry attribute) (datamint.entities.annotations.TextAnnotation attribute) (datamint.entities.annotations.VolumeSegmentation attribute) (datamint.entities.base_entity.BaseEntity attribute) (datamint.entities.base_entity.BaseEntityModel attribute) (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) (datamint.entities.channel.Channel attribute) (datamint.entities.channel.ChannelResourceData attribute) (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) (datamint.entities.project.Project attribute) (datamint.entities.project_resource_split.ProjectResourceSplit attribute) (datamint.entities.resource.LocalResource attribute) (datamint.entities.resource.Resource attribute) (datamint.entities.resources.dicom_resource.DICOMResource attribute) (datamint.entities.resources.image_resource.ImageResource attribute) (datamint.entities.resources.nifti_resource.NiftiResource attribute) (datamint.entities.resources.video_resource.VideoResource attribute) (datamint.entities.resources.volume_resource.VolumeResource attribute) (datamint.entities.user.User attribute) (datamint.mlflow.flavors.prediction_router.DeployedModelPrompts attribute) model_id (datamint.entities.annotations.Annotation attribute) model_name (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) model_post_init() (datamint.entities.annotations.Annotation method) (datamint.entities.annotations.BoxAnnotation method) (datamint.entities.annotations.CategoryAnnotation method) (datamint.entities.annotations.ImageSegmentation method) (datamint.entities.annotations.LabelAnnotation method) (datamint.entities.annotations.LineAnnotation method) (datamint.entities.annotations.NumericAnnotation method) (datamint.entities.annotations.PointAnnotation method) (datamint.entities.annotations.RegionAnnotation method) (datamint.entities.annotations.TextAnnotation method) (datamint.entities.annotations.VolumeSegmentation method) (datamint.entities.base_entity.BaseEntity method) (datamint.entities.base_entity.BaseEntityModel method) (datamint.entities.datasetinfo.DatasetInfo method) (datamint.entities.deployjob.DeployJob method) (datamint.entities.inferencejob.InferenceJob method) (datamint.entities.project.Project method) (datamint.entities.resource.LocalResource method) (datamint.entities.resource.Resource method) (datamint.entities.resources.dicom_resource.DICOMResource method) (datamint.entities.resources.image_resource.ImageResource method) (datamint.entities.resources.nifti_resource.NiftiResource method) (datamint.entities.resources.video_resource.VideoResource method) (datamint.entities.resources.volume_resource.VolumeResource method) (datamint.entities.user.User method)

model_version (datamint.entities.deployjob.DeployJob attribute) ModelNotDeployedError models (datamint.api.client.Api property) ModelsApi (class in datamint.api.endpoints.models_api) ModelVersion (class in datamint.api.endpoints.model_types) ModeSpec (class in datamint.mlflow.flavors.prediction_router) module datamint.api.base_api datamint.api.client datamint.api.dto datamint.api.endpoints.annotations_api datamint.api.endpoints.annotationsets_api datamint.api.endpoints.deploy_model_api datamint.api.endpoints.inference_api datamint.api.endpoints.model_types datamint.api.endpoints.models_api datamint.api.endpoints.projects_api datamint.api.endpoints.resources_api datamint.api.endpoints.users_api datamint.api.entity_base_api datamint.dataset.annotation_processor datamint.dataset.base datamint.dataset.image_dataset datamint.dataset.multiframe_dataset datamint.dataset.sliced_dataset datamint.dataset.sliced_video_dataset datamint.dataset.video_dataset datamint.dataset.volume_dataset datamint.entities.annotations datamint.entities.base_entity datamint.entities.cache_manager datamint.entities.channel datamint.entities.datasetinfo datamint.entities.deployjob datamint.entities.inferencejob datamint.entities.project datamint.entities.project_resource_split datamint.entities.resource datamint.entities.resources.dicom_resource datamint.entities.resources.image_resource datamint.entities.resources.nifti_resource datamint.entities.resources.video_resource datamint.entities.resources.volume_resource datamint.entities.sliced_resource datamint.entities.sliced_video_resource datamint.entities.user datamint.exceptions datamint.importers.coco datamint.importers.pascal_voc datamint.importers.yolo datamint.lightning.benchmark datamint.lightning.datamodule datamint.lightning.trainers datamint.lightning.trainers.base_trainer datamint.lightning.trainers.classification_trainer datamint.lightning.trainers.lightning_modules.base datamint.lightning.trainers.lightning_modules.classification_module datamint.lightning.trainers.lightning_modules.segmentation_module datamint.lightning.trainers.seg2d_trainer datamint.lightning.trainers.seg3d_trainer datamint.lightning.trainers.segmentation_trainer datamint.lightning.trainers.specialized.unetpp datamint.mlflow.artifact.datamint_artifacts_repo datamint.mlflow.data.datamint_dataset datamint.mlflow.env_utils datamint.mlflow.env_vars datamint.mlflow.flavors.datamint_flavor datamint.mlflow.flavors.model datamint.mlflow.flavors.prediction_modes datamint.mlflow.flavors.prediction_router datamint.mlflow.flavors.task_type datamint.mlflow.lightning.callbacks.modelcheckpoint datamint.mlflow.tracking.datamint_store datamint.mlflow.tracking.default_experiment datamint.mlflow.tracking.fluent datamint.utils.annotation_agreement most_recent_experiment (datamint.entities.project.Project attribute), [1] MultiFrameDataset (class in datamint.dataset.multiframe_dataset) MULTILABEL_IMAGE_CLASSIFICATION (datamint.mlflow.flavors.task_type.TaskType attribute)

N

n_boxes_uploaded (datamint.importers.coco.COCOImportResult attribute) (datamint.importers.pascal_voc.PascalVOCImportResult attribute) (datamint.importers.yolo.YOLOImportResult attribute) n_images_uploaded (datamint.importers.coco.COCOImportResult attribute) (datamint.importers.pascal_voc.PascalVOCImportResult attribute) (datamint.importers.yolo.YOLOImportResult attribute) name (datamint.api.endpoints.model_types.Model property) (datamint.api.endpoints.model_types.ModelVersion property) (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.entities.project.Project attribute), [1] NetworkError

NiftiResource (class in datamint.entities.resources.nifti_resource) NNUNetTrainer (class in datamint.lightning.trainers) num_boxes (datamint.importers.coco.COCOParseResult property) (datamint.importers.pascal_voc.PascalVOCParseResult property) (datamint.importers.yolo.YOLOParseResult property) num_classes (datamint.entities.annotations.VolumeSegmentation property) num_images (datamint.importers.coco.COCOParseResult property) (datamint.importers.pascal_voc.PascalVOCParseResult property) (datamint.importers.yolo.YOLOParseResult property) numeric_value (datamint.entities.annotations.Annotation attribute), [1] NumericAnnotation (class in datamint.entities.annotations)

O

OBJECT_DETECTION (datamint.mlflow.flavors.task_type.TaskType attribute) old_geometry (datamint.entities.annotations.Annotation attribute) on_test_epoch_end() (datamint.lightning.trainers.lightning_modules.base.DatamintLightningModule method) (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method)

on_test_start() (datamint.lightning.trainers.lightning_modules.base.DatamintLightningModule method) on_train_epoch_end() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) on_validation_epoch_end() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) overall (datamint.utils.annotation_agreement.AgreementResult attribute), [1]

P

param_keys (datamint.mlflow.flavors.prediction_router.ModeSpec attribute) parse() (datamint.importers.coco.COCOImporter method) (datamint.importers.pascal_voc.PascalVOCImporter method) (datamint.importers.yolo.YOLOImporter method) partial_update() (datamint.api.entity_base_api.UpdatableEntityApi method) PascalVOCBox (class in datamint.importers.pascal_voc) PascalVOCImporter (class in datamint.importers.pascal_voc) PascalVOCImportResult (class in datamint.importers.pascal_voc) PascalVOCParseResult (class in datamint.importers.pascal_voc) PascalVOCSample (class in datamint.importers.pascal_voc) patch() (datamint.api.endpoints.annotations_api.AnnotationsApi method) (datamint.api.entity_base_api.UpdatableEntityApi method) patient_id (datamint.entities.resource.Resource attribute), [1] per_pair (datamint.utils.annotation_agreement.AgreementResult attribute), [1] per_resource_mean (datamint.utils.annotation_agreement.AgreementResult attribute), [1] PermissionDeniedError plot_labels() (datamint.entities.resource.Resource method) plot_segmentations() (datamint.entities.resource.Resource method) plot_shapes() (datamint.entities.resource.Resource method) pod_logs (datamint.api.client.Api property) POINT (datamint.entities.annotations.AnnotationType attribute) point (datamint.entities.annotations.PointGeometry property) point1 (datamint.entities.annotations.BoxGeometry property) point2 (datamint.entities.annotations.BoxGeometry property) point_coordinates (datamint.mlflow.flavors.prediction_router.DeployedModelPrompts attribute) point_labels (datamint.mlflow.flavors.prediction_router.DeployedModelPrompts attribute) PointAnnotation (class in datamint.entities.annotations) PointGeometry (class in datamint.entities.annotations) PointPrompt (class in datamint.api.dto) points (datamint.api.dto.InferencePrompts attribute) (datamint.entities.annotations.BoxGeometry attribute) (datamint.entities.annotations.Geometry attribute) (datamint.entities.annotations.PointGeometry attribute) (datamint.entities.annotations.RegionGeometry attribute) port (datamint.api.base_api.ApiConfig attribute), [1] predict() (datamint.api.endpoints.inference_api.InferenceApi method) (datamint.mlflow.flavors.model.BaseDatamintModel method)

predict_all_frames() (datamint.mlflow.flavors.model.BaseDatamintModel method) predict_default() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.mlflow.flavors.model.BaseDatamintModel method) predict_frame() (datamint.api.endpoints.inference_api.InferenceApi method) (datamint.mlflow.flavors.model.BaseDatamintModel method) predict_image() (datamint.api.endpoints.inference_api.InferenceApi method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) (datamint.mlflow.flavors.model.BaseDatamintModel method) predict_slice() (datamint.api.endpoints.inference_api.InferenceApi method) (datamint.mlflow.flavors.model.BaseDatamintModel method) predict_volume() (datamint.api.endpoints.inference_api.InferenceApi method) (datamint.mlflow.flavors.model.BaseDatamintModel method) prediction_mode() (in module datamint.mlflow.flavors.prediction_router) PredictionMode (class in datamint.mlflow.flavors.prediction_modes) PredictionRouter (class in datamint.mlflow.flavors.prediction_router) predictions (datamint.entities.inferencejob.InferenceJob property) prefetch() (datamint.dataset.base.DatamintBaseDataset method) PRIMARY_SLICE (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) profile (datamint.mlflow.data.datamint_dataset.DatamintMLflowDataset property) progress_percentage (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) Project (class in datamint.entities.project) project (datamint.dataset.base.DatamintBaseDataset attribute) (datamint.importers.coco.COCOImportResult attribute) (datamint.importers.pascal_voc.PascalVOCImportResult attribute) (datamint.importers.yolo.YOLOImportResult attribute) project_id (datamint.entities.project_resource_split.ProjectResourceSplit attribute) ProjectResourceSplit (class in datamint.entities.project_resource_split) projects (datamint.api.client.Api property) (datamint.entities.resource.Resource attribute) projects_api (datamint.api.endpoints.models_api.ModelsApi property) ProjectsApi (class in datamint.api.endpoints.projects_api) publish_resources() (datamint.api.endpoints.resources_api.ResourcesApi method) publish_transforms (datamint.entities.resource.Resource attribute) published (datamint.entities.resource.Resource attribute), [1] published_by (datamint.entities.resource.Resource attribute), [1] published_on (datamint.entities.resource.Resource attribute), [1]

R

rank_resources() (datamint.api.endpoints.resources_api.ResourcesApi method) raw_data (datamint.entities.resource.LocalResource attribute) recent_logs (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) REGION (datamint.entities.annotations.AnnotationType attribute) RegionAnnotation (class in datamint.entities.annotations) RegionGeometry (class in datamint.entities.annotations) register_file_location() (datamint.entities.cache_manager.CacheManager method) remove_annotator() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) remove_image() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) remove_member() (datamint.api.endpoints.projects_api.ProjectsApi method) REPORT_GENERATION (datamint.mlflow.flavors.task_type.TaskType attribute) REQUIRED_IMAGE_SIZE (datamint.lightning.trainers.TransUNetTrainer attribute) reset_annotator_status() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) (datamint.api.endpoints.projects_api.ProjectsApi method) resolve_seg_code() (datamint.dataset.annotation_processor.AnnotationProcessor method) resolve_uri() (datamint.mlflow.artifact.datamint_artifacts_repo.DatamintArtifactsRepository class method) Resource (class in datamint.entities.resource) resource (datamint.entities.annotations.Annotation property) resource_annotations (datamint.dataset.base.DatamintBaseDataset attribute) resource_count (datamint.entities.project.Project attribute), [1] resource_data (datamint.entities.channel.Channel attribute), [1] resource_file_name (datamint.entities.channel.ChannelResourceData attribute), [1] resource_filename (datamint.entities.annotations.Annotation attribute), [1] resource_id (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.channel.ChannelResourceData attribute), [1] (datamint.entities.inferencejob.InferenceJob attribute) (datamint.entities.project_resource_split.ProjectResourceSplit attribute) resource_ids (datamint.entities.datasetinfo.DatasetInfo attribute) (datamint.importers.coco.COCOImportResult attribute) (datamint.importers.pascal_voc.PascalVOCImportResult attribute) (datamint.importers.yolo.YOLOImportResult attribute)

resource_kind (datamint.entities.resource.Resource attribute) (datamint.entities.resources.dicom_resource.DICOMResource attribute) (datamint.entities.resources.image_resource.ImageResource attribute) (datamint.entities.resources.nifti_resource.NiftiResource attribute) (datamint.entities.resources.video_resource.VideoResource attribute) (datamint.entities.resources.volume_resource.VolumeResource attribute) resource_mimetype (datamint.entities.channel.ChannelResourceData attribute), [1] resource_modality (datamint.entities.annotations.Annotation attribute), [1] resource_priority (datamint.entities.resource.Resource attribute) (datamint.entities.resources.dicom_resource.DICOMResource attribute) (datamint.entities.resources.image_resource.ImageResource attribute) (datamint.entities.resources.nifti_resource.NiftiResource attribute) (datamint.entities.resources.video_resource.VideoResource attribute) (datamint.entities.resources.volume_resource.VolumeResource attribute) resource_type (datamint.exceptions.ItemNotFoundError property) resource_uri (datamint.entities.resource.Resource attribute), [1] ResourceFields (in module datamint.api.endpoints.resources_api) ResourceNotFoundError (in module datamint.exceptions) resources (datamint.api.client.Api property) (datamint.dataset.base.DatamintBaseDataset attribute) resources_to_annotate_count (datamint.entities.project.Project attribute) ResourcesApi (class in datamint.api.endpoints.resources_api) ResourceStatus (in module datamint.api.endpoints.resources_api) restore() (datamint.api.endpoints.projects_api.ProjectsApi method) (datamint.api.endpoints.resources_api.ResourcesApi method) result_data (datamint.entities.inferencejob.InferenceJob attribute) revoke_invitation() (datamint.api.endpoints.users_api.UsersApi method) roles (datamint.entities.user.User attribute), [1] run() (datamint.lightning.benchmark.Benchmark method) run_id (datamint.api.endpoints.model_types.ModelVersion property)

S

samples (datamint.importers.coco.COCOParseResult attribute) (datamint.importers.pascal_voc.PascalVOCParseResult attribute) (datamint.importers.yolo.YOLOParseResult attribute) save_config() (datamint.lightning.benchmark.Benchmark method) save_extra_info() (datamint.entities.cache_manager.CacheManager method) save_model() (in module datamint.mlflow.flavors.datamint_flavor) save_results (datamint.entities.inferencejob.InferenceJob attribute) SaveResultsOptions (class in datamint.api.dto) schema (datamint.mlflow.data.datamint_dataset.DatamintMLflowDataset property) scope (datamint.entities.annotations.Annotation attribute), [1] segment_schema() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi static method) SEGMENTATION (datamint.entities.annotations.AnnotationType attribute) segmentation_labels_set (datamint.dataset.base.DatamintBaseDataset property) SegmentationModule (class in datamint.lightning.trainers.lightning_modules.segmentation_module) segmentations (datamint.entities.resource.Resource attribute) SegmentationTrainer (class in datamint.lightning.trainers) (class in datamint.lightning.trainers.segmentation_trainer) SemanticSegmentation2DTrainer (class in datamint.lightning.trainers) (class in datamint.lightning.trainers.seg2d_trainer) SemanticSegmentation3DTrainer (class in datamint.lightning.trainers) (class in datamint.lightning.trainers.seg3d_trainer) series_uid (datamint.entities.resource.Resource attribute), [1] server_url (datamint.api.base_api.ApiConfig attribute), [1] ServerError set() (datamint.entities.cache_manager.CacheManager method) set_annotator() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) set_frame_ranges() (datamint.api.endpoints.annotations_api.AnnotationsApi method) set_member() (datamint.api.endpoints.projects_api.ProjectsApi method) set_memory() (datamint.entities.cache_manager.CacheManager method) set_name (datamint.entities.annotations.Annotation attribute), [1] set_params() (datamint.exceptions.ItemNotFoundError method) set_pinned_metrics() (datamint.api.endpoints.projects_api.ProjectsApi method) (datamint.entities.project.Project method) set_project() (in module datamint.mlflow.tracking.fluent) set_tags() (datamint.api.endpoints.resources_api.ResourcesApi method) set_transform() (datamint.dataset.base.DatamintBaseDataset method) set_work_status() (datamint.api.endpoints.projects_api.ProjectsApi method) (datamint.entities.project.Project method) settings (datamint.mlflow.flavors.model.BaseDatamintModel property) setup_mlflow_environment() (in module datamint.mlflow.env_utils) show() (datamint.entities.project.Project method) (datamint.entities.resource.Resource method)

size (datamint.entities.resource.Resource attribute) SLICE (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) slice() (datamint.dataset.volume_dataset.VolumeDataset method) slice_axis (datamint.lightning.trainers.seg2d_trainer.SemanticSegmentation2DTrainer attribute) (datamint.lightning.trainers.SemanticSegmentation2DTrainer attribute) slice_over() (datamint.entities.sliced_video_resource.SlicedVideoResource static method) SLICE_RANGE (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) SlicedVideoDataset (class in datamint.dataset.sliced_video_dataset) SlicedVideoResource (class in datamint.entities.sliced_video_resource) SlicedVolumeDataset (class in datamint.dataset.sliced_dataset) source (datamint.api.endpoints.model_types.ModelVersion property) (datamint.entities.annotations.Annotation attribute) source_filepath (datamint.entities.resource.Resource attribute), [1] SPLINE (datamint.entities.annotations.AnnotationType attribute) split (datamint.importers.yolo.YOLOSample attribute) split() (datamint.dataset.base.DatamintBaseDataset method) split_name (datamint.entities.project_resource_split.ProjectResourceSplit attribute) SQUARE (datamint.entities.annotations.AnnotationType attribute) standardize_segmentation_names() (datamint.api.endpoints.annotations_api.AnnotationsApi static method) start() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) started_at (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) status (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.deployjob.DeployJob attribute) (datamint.entities.inferencejob.InferenceJob attribute) (datamint.entities.resource.Resource attribute) storage (datamint.entities.resource.Resource attribute) storage_aliases (datamint.entities.resource.Resource attribute) (datamint.entities.resources.dicom_resource.DICOMResource attribute) (datamint.entities.resources.image_resource.ImageResource attribute) (datamint.entities.resources.nifti_resource.NiftiResource attribute) (datamint.entities.resources.video_resource.VideoResource attribute) (datamint.entities.resources.volume_resource.VolumeResource attribute) stream_log_events() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) stream_logs() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) (datamint.entities.deployjob.DeployJob method) stream_status() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) (datamint.api.endpoints.inference_api.InferenceApi method) study_uid (datamint.entities.resource.Resource attribute), [1] submit() (datamint.api.endpoints.inference_api.InferenceApi method) subset() (datamint.dataset.base.DatamintBaseDataset method) supported_modes() (datamint.mlflow.flavors.prediction_router.PredictionRouter method) sync_offline_logs() (datamint.mlflow.tracking.datamint_store.DatamintStore method)

T

tags (datamint.api.endpoints.model_types.Model property) (datamint.api.endpoints.model_types.ModelVersion property) (datamint.entities.resource.Resource attribute), [1] task_type (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule attribute) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule attribute) (datamint.mlflow.flavors.model.BaseDatamintModel attribute) TaskType (class in datamint.mlflow.flavors.task_type) TEMPORAL_SEQUENCE (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) test() (datamint.lightning.trainers.base_trainer.BaseTrainer method) (datamint.lightning.trainers.BaseTrainer method) test_step() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) text (datamint.api.dto.InferencePrompts attribute) TEXT (datamint.entities.annotations.AnnotationType attribute) text (datamint.mlflow.flavors.prediction_router.DeployedModelPrompts attribute) text_value (datamint.entities.annotations.Annotation attribute), [1] TextAnnotation (class in datamint.entities.annotations) timeout (datamint.api.base_api.ApiConfig attribute), [1]

to_cpu_for_save() (datamint.mlflow.flavors.model.BaseDatamintModel method) to_dict() (datamint.api.dto.CreateAnnotationDto method) (datamint.api.dto.InferencePrompts method) (datamint.api.dto.SaveResultsOptions method) (datamint.entities.annotations.Geometry method) (datamint.mlflow.data.datamint_dataset.DatamintMLflowDataset method) to_patient_coordinates() (datamint.entities.annotations.Geometry method) to_pil_image() (datamint.entities.annotations.ImageSegmentation method) to_pixel_coordinates() (datamint.entities.annotations.Geometry method) total_resource (datamint.entities.datasetinfo.DatasetInfo attribute) training_step() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) TransUNetTrainer (class in datamint.lightning.trainers) type (datamint.entities.annotations.Annotation property) (datamint.entities.annotations.BoxGeometry attribute) (datamint.entities.annotations.Geometry attribute) (datamint.entities.annotations.LineGeometry attribute) (datamint.entities.annotations.PointGeometry attribute) (datamint.entities.annotations.RegionGeometry attribute)

U

uids (datamint.entities.resources.dicom_resource.DICOMResource property) UNetPPTrainer (class in datamint.lightning.trainers) (class in datamint.lightning.trainers.specialized.unetpp) UNETRPPTrainer (class in datamint.lightning.trainers) units (datamint.entities.annotations.Annotation attribute), [1] unreferenced_images (datamint.importers.coco.COCOParseResult attribute) (datamint.importers.pascal_voc.PascalVOCParseResult attribute) (datamint.importers.yolo.YOLOParseResult attribute) unsupported_annotations (datamint.importers.coco.COCOParseResult attribute) (datamint.importers.pascal_voc.PascalVOCParseResult attribute) (datamint.importers.yolo.YOLOParseResult attribute) UpdatableEntityApi (class in datamint.api.entity_base_api) update_annotation_status() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) update_registry() (datamint.mlflow.flavors.prediction_router.PredictionRouter method) update_resources() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) update_segmentation_group() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) update_user() (datamint.api.endpoints.users_api.UsersApi method) updated_at (datamint.entities.channel.Channel attribute), [1] (datamint.entities.datasetinfo.DatasetInfo attribute)

upload_annotation_file() (datamint.api.endpoints.annotations_api.AnnotationsApi method) upload_annotation_file_async() (datamint.api.endpoints.annotations_api.AnnotationsApi method) upload_annotations() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) upload_channel (datamint.entities.resource.Resource attribute), [1] upload_mechanism (datamint.entities.resource.Resource attribute), [1] upload_predictions() (datamint.api.endpoints.annotations_api.AnnotationsApi method) upload_resource() (datamint.api.endpoints.resources_api.ResourcesApi method) upload_resources() (datamint.api.endpoints.resources_api.ResourcesApi method) upload_segmentation_group() (datamint.api.endpoints.annotationsets_api.AnnotationWorklistApi method) upload_segmentations() (datamint.api.endpoints.annotations_api.AnnotationsApi method) upload_volume_segmentation() (datamint.api.endpoints.annotations_api.AnnotationsApi method) url (datamint.entities.project.Project property) (datamint.entities.resource.Resource property) User (class in datamint.entities.user) user_info (datamint.entities.annotations.Annotation attribute), [1] (datamint.entities.resource.Resource attribute), [1] users (datamint.api.client.Api property) UsersApi (class in datamint.api.endpoints.users_api)

V

validation_step() (datamint.lightning.trainers.lightning_modules.classification_module.ClassificationModule method) (datamint.lightning.trainers.lightning_modules.segmentation_module.SegmentationModule method) validation_studies (datamint.api.client.Api property) ValidationError value (datamint.entities.annotations.Annotation property) values (datamint.entities.annotations.Annotation attribute), [1] verify_ssl (datamint.api.base_api.ApiConfig attribute), [1] version (datamint.api.endpoints.model_types.ModelVersion property) version_hash (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) version_info (datamint.entities.cache_manager.CacheManager.ItemMetadata attribute) VIDEO_FRAME_CLASSIFICATION (datamint.mlflow.flavors.task_type.TaskType attribute) VIDEO_SEGMENTATION (datamint.mlflow.flavors.task_type.TaskType attribute)

VideoDataset (class in datamint.dataset.video_dataset) VideoResource (class in datamint.entities.resources.video_resource) viewPlaneNormal (datamint.entities.annotations.Geometry attribute) viewUp (datamint.entities.annotations.Geometry attribute) VOLUME (datamint.mlflow.flavors.prediction_modes.PredictionMode attribute) VOLUME_CLASSIFICATION (datamint.mlflow.flavors.task_type.TaskType attribute) VOLUME_SEGMENTATION (datamint.mlflow.flavors.task_type.TaskType attribute) volume_shape (datamint.entities.annotations.VolumeSegmentation property) VolumeDataset (class in datamint.dataset.volume_dataset) VolumeResource (class in datamint.entities.resources.volume_resource) VolumeSegmentation (class in datamint.entities.annotations) VolumeSegmentationTrainer (class in datamint.lightning.trainers)

W

wait() (datamint.api.endpoints.deploy_model_api.DeployModelApi method) (datamint.api.endpoints.inference_api.InferenceApi method) (datamint.entities.deployjob.DeployJob method) (datamint.entities.inferencejob.InferenceJob method) web_app_url (datamint.api.base_api.ApiConfig property) width (datamint.entities.resources.image_resource.ImageResource property) (datamint.entities.resources.video_resource.VideoResource property) (datamint.importers.coco.COCOBox attribute)

with_gpu (datamint.entities.deployjob.DeployJob attribute) worklist (datamint.api.client.Api property) worklist_id (datamint.api.dto.SaveResultsOptions attribute), [1] (datamint.entities.project.Project attribute)

X

x (datamint.api.dto.PointPrompt attribute), [1] (datamint.importers.coco.COCOBox attribute) x1 (datamint.importers.pascal_voc.PascalVOCBox attribute) (datamint.importers.yolo.YOLOBox attribute) x2 (datamint.importers.pascal_voc.PascalVOCBox attribute) (datamint.importers.yolo.YOLOBox attribute)

x_max (datamint.api.dto.BoxPrompt attribute) x_min (datamint.api.dto.BoxPrompt attribute) xywh (datamint.entities.annotations.BoxGeometry property) xyxy (datamint.entities.annotations.BoxGeometry property)

Y

y (datamint.api.dto.PointPrompt attribute), [1] (datamint.importers.coco.COCOBox attribute) y1 (datamint.importers.pascal_voc.PascalVOCBox attribute) (datamint.importers.yolo.YOLOBox attribute) y2 (datamint.importers.pascal_voc.PascalVOCBox attribute) (datamint.importers.yolo.YOLOBox attribute) y_max (datamint.api.dto.BoxPrompt attribute)

y_min (datamint.api.dto.BoxPrompt attribute) YOLOBox (class in datamint.importers.yolo) YOLOImporter (class in datamint.importers.yolo) YOLOImportResult (class in datamint.importers.yolo) YOLOParseResult (class in datamint.importers.yolo) YOLOSample (class in datamint.importers.yolo) YOLOXTrainer (class in datamint.lightning.trainers)