DatamintAPI

Contents

  • Installation
    • Next Steps
  • Setup API key
    • Method 1: Command-line tool (recommended)
    • Method 2: Environment variable
    • Method 3: APIHandler constructor
  • Command-line tools
    • Configuring the Datamint settings
    • Uploading DICOMs/resources to Datamint server
      • Example using include and exclude extensions options:
      • Uploading segmentations along with the resources
      • All available options
  • Client Python API
    • Upload DICOMs or other resources
      • Upload resource files
      • Group up resources using channels
      • Upload, anonymize and add a label
      • Changing the uploaded filename
    • Download resources
    • Publishing resources
    • Upload segmentation
  • Running Experiments
    • Manual logging
      • Manual Summary logging
      • Manual Model details logging
    • Best Practices
  • Pytorch integration
    • Dataset

Python Modules Reference

  • datamint.APIHandler
    • APIHandler
      • APIHandler.add_annotations()
      • APIHandler.add_box_annotation()
      • APIHandler.add_frame_category_annotation()
      • APIHandler.add_image_category_annotation()
      • APIHandler.add_line_annotation()
      • APIHandler.add_to_project()
      • APIHandler.convert_format()
      • APIHandler.create_project()
      • APIHandler.create_user()
      • APIHandler.delete_project()
      • APIHandler.delete_resources()
      • APIHandler.download_multiple_resources()
      • APIHandler.download_multiple_segmentations()
      • APIHandler.download_project()
      • APIHandler.download_resource_file()
      • APIHandler.download_resource_frame()
      • APIHandler.download_segmentation_file()
      • APIHandler.get_annotation_by_id()
      • APIHandler.get_annotation_worklist()
      • APIHandler.get_annotation_worklist_by_id()
      • APIHandler.get_annotations()
      • APIHandler.get_channels()
      • APIHandler.get_datasets()
      • APIHandler.get_datasetsinfo_by_name()
      • APIHandler.get_experiment_by_name()
      • APIHandler.get_project_by_id()
      • APIHandler.get_project_by_name()
      • APIHandler.get_project_resources()
      • APIHandler.get_projects()
      • APIHandler.get_resources()
      • APIHandler.get_resources_by_ids()
      • APIHandler.get_users()
      • APIHandler.publish_resources()
      • APIHandler.update_annotation_worklist()
      • APIHandler.upload_resource()
      • APIHandler.upload_resources()
      • APIHandler.upload_segmentations()
    • DatamintException
    • ResourceFields
    • ResourceNotFoundError
    • ResourceStatus
  • Dataset Classes
    • DatamintDataset
      • DatamintDataset.__add__()
      • DatamintDataset.__getitem__()
      • DatamintDataset.__iter__()
      • DatamintDataset.__len__()
      • DatamintDataset.download_project()
      • DatamintDataset.frame_categories_set
      • DatamintDataset.frame_labels_set
      • DatamintDataset.get_annotations()
      • DatamintDataset.get_collate_fn()
      • DatamintDataset.get_dataloader()
      • DatamintDataset.get_framelabel_distribution()
      • DatamintDataset.get_info()
      • DatamintDataset.get_resources_ids()
      • DatamintDataset.get_segmentationlabel_distribution()
      • DatamintDataset.image_categories_set
      • DatamintDataset.image_labels_set
      • DatamintDataset.read_number_of_frames()
      • DatamintDataset.segmentation_labels_set
      • DatamintDataset.subset()
    • DatamintBaseDataset
      • DatamintBaseDataset.__add__()
      • DatamintBaseDataset.__getitem__()
      • DatamintBaseDataset.__iter__()
      • DatamintBaseDataset.__len__()
      • DatamintBaseDataset.__repr__()
      • DatamintBaseDataset.download_project()
      • DatamintBaseDataset.frame_categories_set
      • DatamintBaseDataset.frame_labels_set
      • DatamintBaseDataset.get_annotations()
      • DatamintBaseDataset.get_collate_fn()
      • DatamintBaseDataset.get_dataloader()
      • DatamintBaseDataset.get_framelabel_distribution()
      • DatamintBaseDataset.get_info()
      • DatamintBaseDataset.get_resources_ids()
      • DatamintBaseDataset.get_segmentationlabel_distribution()
      • DatamintBaseDataset.image_categories_set
      • DatamintBaseDataset.image_labels_set
      • DatamintBaseDataset.read_number_of_frames()
      • DatamintBaseDataset.segmentation_labels_set
      • DatamintBaseDataset.subset()
    • DatamintDatasetException
  • datamint.Experiment
DatamintAPI
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